The cheapest and fastest trains from San Diego, CA to Flagstaff, AZ
Cheapest price
$135
Average price
$157
Fastest journey
13 h 50 m
Average duration
13 h 50 m
Trains per day
2
Distance
578 km
The best way to find a cheap train ticket from San Diego, CA to Flagstaff, AZ is to book your journey as far in advance as possible and to avoid traveling at rush hour.
The average ticket from San Diego, CA to Flagstaff, AZ will cost around $157 if you buy it on the day, but the cheapest tickets can be found for only $135.
Of the 2 trains that leave San Diego, CA for Flagstaff, AZ on Wed, Aug 26, 2 travel direct so it’s quite easy to avoid journeys where you’ll have to change along the way.
On Wed, Aug 26 the direct trains cover the 578 km distance in an average of 13 h 50 m but if you time it right, some trains will get you there in just 13 h 50 m .
On Wed, Aug 26 the slowest trains will take 13 h 50 m and usually involve a change or two along the way, but you might be able to save a few pennies if you’re on a budget.
10:01 PM13h50San Diego, CA11:51 AMFlagstaff, AZ$1351One-way0 transfers
9:01 PM13h50San Diego, CA10:51 AMFlagstaff, AZ$1791One-way0 transfers
10:01 PM13h50San Diego, CA11:51 AMFlagstaff, AZ$1351One-way0 transfers
9:01 PM13h50San Diego, CA10:51 AMFlagstaff, AZ$1791One-way0 transfers
Travel Information
Compare bus and train for San Diego, CA to Flagstaff, AZ
Omio recommends booking the train as it is the most popular option from San Diego, CA to Flagstaff, AZ among Omio's users. If you are prioritising price take the bus with prices starting from $70. For those with little time consider booking a train which can get you there in 12h 5m. The ticket price range depends on the travel mode: a bus costs an average of $70, and a train costs an average of $104.
Distance: 359 miles (578 km)
Compare train with
Most popular Train | Bus | Driving |
|---|---|---|
$114 Average price | $91 Average price Cheapest | $102 Average price (fuel + tolls) |
12h 35m Average total duration Fastest 12h 5m Onboard + 30m Additional time* | 14h 5m Average total duration 13h 35m Onboard + 30m Additional time* | 6h 50m Average total duration (door-to-door) |
![]() Most popular train company | ![]() Most popular bus company | Your own car or car rental |
Direct Options | Direct Options | Direct Options |
This is compared to other travel options from San Diego, CA to Flagstaff, AZ:
A bus is $23 less than a train for this route with tickets for a train from San Diego, CA to Flagstaff, AZ costing on average $114.
Other travel options to Flagstaff, AZ take longer:
Bus takes on average 13h 35m.
Tickets start at around $114 compared to roughly $102 in fuel and tolls — a saving of about $-12.68. The journey takes 12h 5m versus 6h 50m by car, so you'll arrive a bit later, but you can work, read, or sleep along the way rather than spending the time behind the wheel. You'll also save the hassle of parking at the other end.
Driving is worth it if you're on a tight schedule, travelling as a group, or want to stop somewhere en route.
Live departures
San Diego, CA to Flagstaff, AZ train times
The table below shows live departures for San Diego, CA to Flagstaff, AZ trains for today, Tuesday, August 25. You can also manually refresh the results below to see updated train journeys.
| Provider | Departs | Duration | Arrives | Transfers | Tickets |
|---|---|---|---|---|---|
![]() | 9:01 PM San Diego, CA | 13h50 | 10:51 AM Flagstaff, AZ | 0 transfersDirect | |
![]() | 10:01 PM San Diego, CA | 13h50 | 11:51 AM Flagstaff, AZ | 0 transfersDirect | |
This is the last train of the day. | |||||
Find all the dates and times for this journey
Compare prices and tickets San Diego, CA to Flagstaff, AZ by bus or train
Compare bus and train prices over the next three weeks. See the best deals at a glance, find the lowest fares, and choose the option that fits your budget.
Aug 26
Aug 27
Aug 28
Aug 29
Aug 30
Aug 31
Sep 01
Journey information
Overview: Train from San Diego, CA to Flagstaff, AZ
Trains from San Diego, CA to Flagstaff, AZ run on average 2 times per day, taking around 12h 5m. Cheap train tickets for this journey start at $104 but you can travel from only $70 by bus.
The earliest train runs at 14:01, the last at 21:15. The fastest train covers the 359 miles (578 km) distance in 13h 30m.
Distance 359 miles (578 km) |
Average train duration 12h 5m |
Cheapest ticket price $104 |
Trains per day 2 |
Fastest train 13h 30m |
First train 2:01 PM |
Last train 9:15 PM |
Cheapest Month Mar |
Cheapest Day Tue |
High Season Jul - Sep |
Low Season Oct - Dec |
Best time to book 4 days |
Train companies: Amtrak from San Diego, CA to Flagstaff, AZ trainsAmtrak trains will get you between San Diego, CA and Flagstaff, AZ from $70. With over 1000 travel companies on Omio, you can find the best train times and tickets for your trip.
Amtrak
FAQs: Trains from San Diego, CA to Flagstaff, AZ
Find answers to the most common questions about traveling from San Diego, CA to Flagstaff, AZ by train. From journey times and ticket prices to direct connections, first and last departures, and even whether the route is scenic, our FAQs cover everything you need to plan your trip. Whether you’re looking for the fastest train, the cheapest option, or tips for making the most of your visit at Flagstaff, AZ, this guide helps you travel smarter and with confidence.

popular train stations
Popular train stations from San Diego, CA to Flagstaff, AZ
Most San Diego, CA to Flagstaff, AZ trains use the Santa Fe Depot to Flagstaff Amtrak station pair. Use this guide to compare San Diego, CA and Flagstaff, AZ train stations on this route, check city-centre transport, alongside checking practicalities like train station facilities and services.
Which San Diego, CA station do trains to Flagstaff, AZ leave from?
Getting to Santa Fe Depot from San Diego city centre
Santa Fe Depot is 1 km from San Diego city centre. Public transport options include:
Santa Fe Depot train station facilities and services
Santa Fe Depot has practical services for this route, including Wifi, Lockers, Parking, Dining, ATM, Taxis, Accessibility, WC, Hotel, Lost and Found Office, Ticket Office, Bike Parking, Car Rental, Information Desk, and Luggage Carts.
Food and drink
Food options include: The Fish Market, Karl Strauss Brewing Company
Wi-Fi and ATMs
Free. ATMs are available in the train station.
Tickets and information
Ticket office support is available at Santa Fe Depot. Information desks are located in the main hall.
Luggage and lost property
Luggage storage is available at Santa Fe Depot. Lost and found is available at the station.
Parking, taxis and toilets
Available at Santa Fe Depot: Parking, Taxis, WC.
Bike and car services
Available at Santa Fe Depot: Bike Parking, Car Rental.
Accessibility
Accessibility facilities are available at Santa Fe Depot: Ramps.
Shops, hotels and contact
Nearby hotels include The Westin San Diego, The Guild Hotel, San Diego, a Tribute Portfolio Hotel, Embassy Suites by Hilton San Diego Bay Downtown.
Getting to Old Town Station from San Diego city centre
Old Town Station is 5 km from San Diego city centre. Public transport options include:
Old Town Station train station facilities and services
Old Town Station has practical services for this route, including Wifi, Lockers, Parking, Dining, ATM, Taxis, Accessibility, WC, Hotel, Lost and Found Office, Ticket Office, Bike Parking, Car Rental, Information Desk, and Luggage Carts.
Food and drink
Food options include: Casa Guadalajara, Old Town Mexican Cafe
Wi-Fi and ATMs
Free. ATMs are available in the train station.
Tickets and information
Ticket office support is available at Old Town Station. Information desks are located in the main hall.
Luggage and lost property
Luggage storage is available at Old Town Station. Lost and found is available at the station.
Parking, taxis and toilets
Available at Old Town Station: Parking, Taxis, WC.
Bike and car services
Available at Old Town Station: Bike Parking, Car Rental.
Accessibility
Accessibility facilities are available at Old Town Station: Elevators, ramps.
Shops, hotels and contact
Nearby hotels include Old Town Inn, Fairfield Inn & Suites by Marriott San Diego Old Town, Best Western Plus Hacienda Hotel Old Town.
Which Flagstaff, AZ station do trains from San Diego, CA arrive at?
Getting to Flagstaff Amtrak from Flagstaff city centre
Flagstaff Amtrak train station facilities and services
Flagstaff Amtrak has practical services for this route, including Lockers, Parking, Dining, Taxis, Accessibility, WC, Hotel, Lost and Found Office, Ticket Office, Bike Parking, Information Desk, and Luggage Carts.
Food and drink
Food options include: Beaver Street Brewery, Pizzicletta
Tickets and information
Ticket office support is available at Flagstaff Amtrak. Information desks are located in the main hall.
Luggage and lost property
Luggage storage is available at Flagstaff Amtrak. Lost and found is available at the station.
Parking, taxis and toilets
Available at Flagstaff Amtrak: Parking, Taxis, WC.
Bike and car services
Available at Flagstaff Amtrak: Bike Parking.
Accessibility
Accessibility facilities are available at Flagstaff Amtrak: Ramps.
Shops, hotels and contact
Nearby hotels include Hotel Monte Vista, Drury Inn & Suites Flagstaff, Residence Inn by Marriott Flagstaff.
Most popular train connections from San Diego, CA
More options for your journey from San Diego, CA to Flagstaff, AZ
Here are some other resources that might have the information you need

